J4_6SPB_009

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6SPB|1|A|U|1958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPB_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1511

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6SPB|1|A|C|1820
6SPB|1|A|U|1821
6SPB|1|A|G|1822
*
6SPB|1|A|C|1892
6SPB|1|A|G|1893
*
6SPB|1|A|C|1911
6SPB|1|A|C|1912
6SPB|1|A|U|1913
6SPB|1|A|A|1914
6SPB|1|A|A|1915
6SPB|1|A|G|1916
6SPB|1|A|G|1917
6SPB|1|A|U|1918
6SPB|1|A|A|1919
6SPB|1|A|G|1920
*
6SPB|1|A|C|1954
6SPB|1|A|G|1955
6SPB|1|A|A|1956
6SPB|1|A|A|1957
6SPB|1|A|U|1958
6SPB|1|A|G|1959

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2