J4_6SPC_003
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6SPC|1|a|C|570, 6SPC|1|a|A|809, 6SPC|1|a|C|811, 6SPC|1|a|A|813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPC_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.091
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SPC|1|a|G|569
6SPC|1|a|C|570
6SPC|1|a|G|571
*
6SPC|1|a|C|758
6SPC|1|a|G|759
6SPC|1|a|A|760
6SPC|1|a|A|761
6SPC|1|a|A|762
6SPC|1|a|G|763
*
6SPC|1|a|C|804
6SPC|1|a|C|805
6SPC|1|a|G|806
6SPC|1|a|U|807
6SPC|1|a|A|808
6SPC|1|a|A|809
6SPC|1|a|A|810
6SPC|1|a|C|811
6SPC|1|a|G|812
6SPC|1|a|A|813
6SPC|1|a|U|814
6SPC|1|a|G|815
*
6SPC|1|a|C|873
6SPC|1|a|C|874
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
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