J4_6SPD_001

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAGCGGAAC*GGCC*GUG*CGUACGCGAAA

Length

27 nucleotides

Bulged bases

6SPD|1|A|A|293, 6SPD|1|A|U|318

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|U|287
6SPD|1|A|A|288
6SPD|1|A|G|289
6SPD|1|A|C|290
6SPD|1|A|G|291
6SPD|1|A|G|292
6SPD|1|A|A|293
6SPD|1|A|A|294
6SPD|1|A|C|295
*
6SPD|1|A|G|310
6SPD|1|A|G|311
6SPD|1|A|C|312
6SPD|1|A|C|313
*
6SPD|1|A|G|317
6SPD|1|A|U|318
6SPD|1|A|G|319
*
6SPD|1|A|C|331
6SPD|1|A|G|332
6SPD|1|A|U|333
6SPD|1|A|A|334
6SPD|1|A|C|335
6SPD|1|A|G|336
6SPD|1|A|C|337
6SPD|1|A|G|338
6SPD|1|A|A|339
6SPD|1|A|A|340
6SPD|1|A|A|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24