J4_6SPD_002

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGACAAU*AC*GCUUG*CAG

Length

17 nucleotides

Bulged bases

6SPD|1|A|G|1258, 6SPD|1|A|A|1259, 6SPD|1|A|C|1260, 6SPD|1|A|U|1637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|C|1257
6SPD|1|A|G|1258
6SPD|1|A|A|1259
6SPD|1|A|C|1260
6SPD|1|A|A|1261
6SPD|1|A|A|1262
6SPD|1|A|U|1263
*
6SPD|1|A|A|1281
6SPD|1|A|C|1282
*
6SPD|1|A|G|1635
6SPD|1|A|C|1636
6SPD|1|A|U|1637
6SPD|1|A|U|1638
6SPD|1|A|G|1639
*
6SPD|1|A|C|1995
6SPD|1|A|A|1996
6SPD|1|A|G|1997

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22