J4_6SPD_007

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6SPD|1|A|U|1958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPD_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.176

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6SPD|1|A|C|1820
6SPD|1|A|U|1821
6SPD|1|A|G|1822
*
6SPD|1|A|C|1892
6SPD|1|A|G|1893
*
6SPD|1|A|C|1911
6SPD|1|A|C|1912
6SPD|1|A|U|1913
6SPD|1|A|A|1914
6SPD|1|A|A|1915
6SPD|1|A|G|1916
6SPD|1|A|G|1917
6SPD|1|A|U|1918
6SPD|1|A|A|1919
6SPD|1|A|G|1920
*
6SPD|1|A|C|1954
6SPD|1|A|G|1955
6SPD|1|A|A|1956
6SPD|1|A|A|1957
6SPD|1|A|U|1958
6SPD|1|A|G|1959

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2