J4_6SPD_009
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGGC*GAC*GGAAA*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPD_009 not in the Motif Atlas
- Homologous match to J4_4WF9_009
- Geometric discrepancy: 0.1595
- The information below is about J4_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPD|1|A|G|2630
6SPD|1|A|G|2631
6SPD|1|A|G|2632
6SPD|1|A|C|2633
*
6SPD|1|A|G|2661
6SPD|1|A|A|2662
6SPD|1|A|C|2663
*
6SPD|1|A|G|2717
6SPD|1|A|G|2718
6SPD|1|A|A|2719
6SPD|1|A|A|2720
6SPD|1|A|A|2721
*
6SPD|1|A|U|2755
6SPD|1|A|G|2756
6SPD|1|A|C|2757
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
Coloring options: