J4_6SW9_001

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

6SW9|1|2|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|111
6SW9|1|2|A|112
6SW9|1|2|G|113
6SW9|1|2|U|114
6SW9|1|2|A|115
6SW9|1|2|A|116
6SW9|1|2|C|117
6SW9|1|2|A|118
6SW9|1|2|C|119
*
6SW9|1|2|G|247
6SW9|1|2|G|248
6SW9|1|2|C|249
*
6SW9|1|2|G|295
6SW9|1|2|U|296
6SW9|1|2|A|297
6SW9|1|2|C|298
*
6SW9|1|2|G|320
6SW9|1|2|G|321

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17