J4_6SWA_001

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCUCC*GGCCGGG*CCACGCGCGCG*CGGCGGAGCGAGC

Length

38 nucleotides

Bulged bases

6SWA|1|q|U|967, 6SWA|1|q|C|968, 6SWA|1|q|C|1055, 6SWA|1|q|C|1220, 6SWA|1|q|G|1254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|965
6SWA|1|q|C|966
6SWA|1|q|U|967
6SWA|1|q|C|968
6SWA|1|q|U|969
6SWA|1|q|C|970
6SWA|1|q|C|971
*
6SWA|1|q|G|1052
6SWA|1|q|G|1053
6SWA|1|q|C|1054
6SWA|1|q|C|1055
6SWA|1|q|G|1056
6SWA|1|q|G|1057
6SWA|1|q|G|1058
*
6SWA|1|q|C|1219
6SWA|1|q|C|1220
6SWA|1|q|A|1221
6SWA|1|q|C|1222
6SWA|1|q|G|1223
6SWA|1|q|C|1224
6SWA|1|q|G|1225
6SWA|1|q|C|1226
6SWA|1|q|G|1227
6SWA|1|q|C|1228
6SWA|1|q|G|1229
*
6SWA|1|q|C|1247
6SWA|1|q|G|1248
6SWA|1|q|G|1249
6SWA|1|q|C|1250
6SWA|1|q|G|1251
6SWA|1|q|G|1252
6SWA|1|q|A|1253
6SWA|1|q|G|1254
6SWA|1|q|C|1255
6SWA|1|q|G|1256
6SWA|1|q|A|1257
6SWA|1|q|G|1258
6SWA|1|q|C|1259

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7