J4_6SWA_002

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

6SWA|1|q|A|2345, 6SWA|1|q|U|2348, 6SWA|1|q|U|2805, 6SWA|1|q|U|2807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|C|2344
6SWA|1|q|A|2345
6SWA|1|q|A|2346
6SWA|1|q|A|2347
6SWA|1|q|U|2348
6SWA|1|q|A|2349
6SWA|1|q|U|2350
*
6SWA|1|q|A|2368
6SWA|1|q|G|2369
6SWA|1|q|G|2370
*
6SWA|1|q|C|2803
6SWA|1|q|A|2804
6SWA|1|q|U|2805
6SWA|1|q|G|2806
6SWA|1|q|U|2807
6SWA|1|q|U|2808
*
6SWA|1|q|A|3827
6SWA|1|q|G|3828

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain O

60S ribosomal protein L17

Chain b

60S ribosomal protein L31

Chain o

60S ribosomal protein L19