J4_6SWA_005

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

6SWA|1|q|G|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|A|2530
6SWA|1|q|G|2531
6SWA|1|q|A|2532
6SWA|1|q|U|2533
6SWA|1|q|G|2534
*
6SWA|1|q|C|2551
6SWA|1|q|A|2552
6SWA|1|q|G|2553
6SWA|1|q|U|2554
6SWA|1|q|G|2555
*
6SWA|1|q|C|2564
6SWA|1|q|G|2565
6SWA|1|q|A|2566
6SWA|1|q|C|2567
6SWA|1|q|C|2568
*
6SWA|1|q|G|2735
6SWA|1|q|A|2736
6SWA|1|q|G|2737
6SWA|1|q|G|2738
6SWA|1|q|G|2739
6SWA|1|q|U|2740
6SWA|1|q|G|2741
6SWA|1|q|U|2742
6SWA|1|q|A|2743
6SWA|1|q|A|2744
6SWA|1|q|A|2745
6SWA|1|q|U|2746

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain X

60S ribosomal protein L27

Chain e

60S ribosomal protein L34