J4_6SWA_006

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAGCGUC*GGGGUC

Length

25 nucleotides

Bulged bases

6SWA|1|q|A|2675, 6SWA|1|q|U|2697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|2597
6SWA|1|q|G|2598
*
6SWA|1|q|U|2616
6SWA|1|q|G|2617
6SWA|1|q|U|2618
6SWA|1|q|G|2619
6SWA|1|q|A|2620
6SWA|1|q|A|2621
*
6SWA|1|q|U|2671
6SWA|1|q|G|2672
6SWA|1|q|G|2673
6SWA|1|q|A|2674
6SWA|1|q|A|2675
6SWA|1|q|A|2676
6SWA|1|q|G|2677
6SWA|1|q|C|2678
6SWA|1|q|G|2679
6SWA|1|q|U|2680
6SWA|1|q|C|2681
*
6SWA|1|q|G|2693
6SWA|1|q|G|2694
6SWA|1|q|G|2695
6SWA|1|q|G|2696
6SWA|1|q|U|2697
6SWA|1|q|C|2698

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain S

60S ribosomal protein L22

Chain e

60S ribosomal protein L34

Chain i

60S ribosomal protein L38

Chain o

60S ribosomal protein L19