J4_6SWA_009

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAGG*CUUGAUC*GACC*GGG

Length

20 nucleotides

Bulged bases

6SWA|1|q|A|4196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|C|4193
6SWA|1|q|U|4194
6SWA|1|q|A|4195
6SWA|1|q|A|4196
6SWA|1|q|G|4197
6SWA|1|q|G|4198
*
6SWA|1|q|C|4250
6SWA|1|q|U|4251
6SWA|1|q|U|4252
6SWA|1|q|G|4253
6SWA|1|q|A|4254
6SWA|1|q|U|4255
6SWA|1|q|C|4256
*
6SWA|1|q|G|4278
6SWA|1|q|A|4279
6SWA|1|q|C|4280
6SWA|1|q|C|4281
*
6SWA|1|q|G|4290
6SWA|1|q|G|4291
6SWA|1|q|G|4292

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29

Chain m

MCG115063, isoform CRA_a