J4_6SWD_002

3D structure

PDB id

6SWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWD|1|2|G|139
6SWD|1|2|A|140
6SWD|1|2|G|141
*
6SWD|1|2|C|175
6SWD|1|2|A|176
6SWD|1|2|U|177
6SWD|1|2|A|178
6SWD|1|2|G|179
*
6SWD|1|2|C|207
6SWD|1|2|G|208
6SWD|1|2|A|209
6SWD|1|2|A|210
6SWD|1|2|A|211
6SWD|1|2|G|212
6SWD|1|2|G|213
*
6SWD|1|2|C|228
6SWD|1|2|G|229
6SWD|1|2|C|230

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e