J4_6SWD_003
3D structure
- PDB id
- 6SWD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2 body model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUAAAGCG*(4AC)GAAG*UGUAAAGGAUG*C(4AC)G
- Length
- 28 nucleotides
- Bulged bases
- 6SWD|1|2|A|538, 6SWD|1|2|C|542, 6SWD|1|2|A|782
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SWD|1|2|C|535
6SWD|1|2|C|536
6SWD|1|2|U|537
6SWD|1|2|A|538
6SWD|1|2|A|539
6SWD|1|2|A|540
6SWD|1|2|G|541
6SWD|1|2|C|542
6SWD|1|2|G|543
*
6SWD|1|2|4AC|731
6SWD|1|2|G|732
6SWD|1|2|A|733
6SWD|1|2|A|734
6SWD|1|2|G|735
*
6SWD|1|2|U|778
6SWD|1|2|G|779
6SWD|1|2|U|780
6SWD|1|2|A|781
6SWD|1|2|A|782
6SWD|1|2|A|783
6SWD|1|2|G|784
6SWD|1|2|G|785
6SWD|1|2|A|786
6SWD|1|2|U|787
6SWD|1|2|G|788
*
6SWD|1|2|C|850
6SWD|1|2|4AC|851
6SWD|1|2|G|852
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 0
- 30S ribosomal protein aL41
- Chain I
- 30S ribosomal protein S8
- Chain M
- 30S ribosomal protein S11
- Chain N
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S17
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