3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAUG
Length
21 nucleotides
Bulged bases
6SZS|1|A|U|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6SZS_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.0889
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

6SZS|1|A|C|1833
6SZS|1|A|U|1834
6SZS|1|A|G|1835
*
6SZS|1|A|C|1905
6SZS|1|A|G|1906
*
6SZS|1|A|C|1924
6SZS|1|A|C|1925
6SZS|1|A|U|1926
6SZS|1|A|A|1927
6SZS|1|A|A|1928
6SZS|1|A|G|1929
6SZS|1|A|G|1930
6SZS|1|A|U|1931
6SZS|1|A|A|1932
6SZS|1|A|G|1933
*
6SZS|1|A|C|1967
6SZS|1|A|G|1968
6SZS|1|A|A|1969
6SZS|1|A|A|1970
6SZS|1|A|U|1971
6SZS|1|A|G|1972

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain x
Transfer RNA; tRNA

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