3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
6SZS|1|a|C|576, 6SZS|1|a|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6SZS_014 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0699
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

6SZS|1|a|G|575
6SZS|1|a|C|576
6SZS|1|a|G|577
*
6SZS|1|a|C|764
6SZS|1|a|G|765
6SZS|1|a|A|766
6SZS|1|a|A|767
6SZS|1|a|A|768
6SZS|1|a|G|769
*
6SZS|1|a|C|810
6SZS|1|a|C|811
6SZS|1|a|G|812
6SZS|1|a|U|813
6SZS|1|a|A|814
6SZS|1|a|A|815
6SZS|1|a|A|816
6SZS|1|a|C|817
6SZS|1|a|G|818
6SZS|1|a|A|819
6SZS|1|a|U|820
6SZS|1|a|G|821
*
6SZS|1|a|C|879
6SZS|1|a|C|880

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17
Chain u
30S ribosomal protein S21

Coloring options:


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