J4_6SZS_015
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- UUGG*CAC*GGGGUCG*UA
- Length
- 16 nucleotides
- Bulged bases
- 6SZS|1|x|U|8, 6SZS|1|x|U|47, 6SZS|1|x|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SZS_015 not in the Motif Atlas
- Homologous match to J4_9DFC_015
- Geometric discrepancy: 0.21
- The information below is about J4_9DFC_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6SZS|1|x|U|7
6SZS|1|x|U|8
6SZS|1|x|G|9
6SZS|1|x|G|10
*
6SZS|1|x|C|25
6SZS|1|x|A|26
6SZS|1|x|C|27
*
6SZS|1|x|G|43
6SZS|1|x|G|44
6SZS|1|x|G|45
6SZS|1|x|G|46
6SZS|1|x|U|47
6SZS|1|x|C|48
6SZS|1|x|G|49
*
6SZS|1|x|U|65
6SZS|1|x|A|66
Current chains
- Chain x
- P-site tRNA-Pro(CGG)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain m
- 30S ribosomal protein S13
- Chain z
- Peptide chain release factor 2
Coloring options: