J4_6T4Q_001
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 6T4Q|1|6|U|8, 6T4Q|1|6|U|47, 6T4Q|1|6|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6T4Q_001 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2188
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
6T4Q|1|6|G|7
6T4Q|1|6|U|8
6T4Q|1|6|G|9
6T4Q|1|6|G|10
*
6T4Q|1|6|C|25
6T4Q|1|6|G|26
6T4Q|1|6|U|27
*
6T4Q|1|6|A|43
6T4Q|1|6|A|44
6T4Q|1|6|G|45
6T4Q|1|6|A|46
6T4Q|1|6|U|47
6T4Q|1|6|U|48
6T4Q|1|6|C|49
*
6T4Q|1|6|G|65
6T4Q|1|6|C|66
Current chains
- Chain 6
- ICG tRNA Arg (P/P)
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10
- Chain SZ
- 40S ribosomal protein S25-A
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