J4_6T4Q_003

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUAGCG*CACAU*GAGACC*GU

Length

19 nucleotides

Bulged bases

6T4Q|1|7|U|8, 6T4Q|1|7|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T4Q|1|7|A|7
6T4Q|1|7|U|8
6T4Q|1|7|A|9
6T4Q|1|7|G|10
6T4Q|1|7|C|11
6T4Q|1|7|G|12
*
6T4Q|1|7|C|23
6T4Q|1|7|A|24
6T4Q|1|7|C|25
6T4Q|1|7|A|26
6T4Q|1|7|U|27
*
6T4Q|1|7|G|43
6T4Q|1|7|A|44
6T4Q|1|7|G|45
6T4Q|1|7|A|46
6T4Q|1|7|C|47
6T4Q|1|7|C|48
*
6T4Q|1|7|G|64
6T4Q|1|7|U|65

Current chains

Chain 7

tRNA (E/E)

Nearby chains

Chain Lo

60S ribosomal protein L42-A

Chain SB

40S ribosomal protein S1-A

Chain SF

Rps5p