J4_6T7T_002
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAG*CGUU*AAAUGUCA*UA
- Length
- 18 nucleotides
- Bulged bases
- 6T7T|1|7|U|8, 6T7T|1|7|U|47, 6T7T|1|7|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6T7T_002 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.3109
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6T7T|1|7|U|7
6T7T|1|7|U|8
6T7T|1|7|A|9
6T7T|1|7|G|10
*
6T7T|1|7|C|25
6T7T|1|7|G|26
6T7T|1|7|U|27
6T7T|1|7|U|28
*
6T7T|1|7|A|42
6T7T|1|7|A|43
6T7T|1|7|A|44
6T7T|1|7|U|45
6T7T|1|7|G|46
6T7T|1|7|U|47
6T7T|1|7|C|48
6T7T|1|7|A|49
*
6T7T|1|7|U|65
6T7T|1|7|A|66
Current chains
- Chain 7
- tRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain Lo
- 60S ribosomal protein L42-A
- Chain SF
- Rps5p
Coloring options: