J4_6T7T_009

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6T7T|1|C1|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T7T|1|C1|C|2192
6T7T|1|C1|U|2193
6T7T|1|C1|G|2194
*
6T7T|1|C1|C|2248
6T7T|1|C1|G|2249
*
6T7T|1|C1|C|2267
6T7T|1|C1|U|2268
6T7T|1|C1|U|2269
6T7T|1|C1|A|2270
6T7T|1|C1|A|2271
6T7T|1|C1|G|2272
6T7T|1|C1|G|2273
6T7T|1|C1|U|2274
6T7T|1|C1|A|2275
6T7T|1|C1|G|2276
*
6T7T|1|C1|U|2310
6T7T|1|C1|G|2311
6T7T|1|C1|A|2312
6T7T|1|C1|A|2313
6T7T|1|C1|U|2314
6T7T|1|C1|G|2315

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Ln

60S ribosomal protein L41-A