J4_6T83_012

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAG*CGU*AAUGUCA*UA

Length

16 nucleotides

Bulged bases

6T83|1|6b|U|8, 6T83|1|6b|U|47, 6T83|1|6b|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T83_012 not in the Motif Atlas

Homologous match to J4_3TUP_001

Geometric discrepancy: 0.224

The information below is about J4_3TUP_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6T83|1|6b|U|7
6T83|1|6b|U|8
6T83|1|6b|A|9
6T83|1|6b|G|10
*
6T83|1|6b|C|25
6T83|1|6b|G|26
6T83|1|6b|U|27
*
6T83|1|6b|A|43
6T83|1|6b|A|44
6T83|1|6b|U|45
6T83|1|6b|G|46
6T83|1|6b|U|47
6T83|1|6b|C|48
6T83|1|6b|A|49
*
6T83|1|6b|U|65
6T83|1|6b|A|66

Current chains

Chain 6b

tRNA

Nearby chains

Chain 1b

Large subunit ribosomal RNA; LSU rRNA

Chain Iy

60S ribosomal protein L10

Chain Zb

40S ribosomal protein S25-A