J4_6T83_012
3D structure
- PDB id
- 6T83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast disome (di-ribosome) stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUAG*CGU*AAUGUCA*UA
- Length
- 16 nucleotides
- Bulged bases
- 6T83|1|6b|U|8, 6T83|1|6b|U|47, 6T83|1|6b|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6T83_012 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.224
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6T83|1|6b|U|7
6T83|1|6b|U|8
6T83|1|6b|A|9
6T83|1|6b|G|10
*
6T83|1|6b|C|25
6T83|1|6b|G|26
6T83|1|6b|U|27
*
6T83|1|6b|A|43
6T83|1|6b|A|44
6T83|1|6b|U|45
6T83|1|6b|G|46
6T83|1|6b|U|47
6T83|1|6b|C|48
6T83|1|6b|A|49
*
6T83|1|6b|U|65
6T83|1|6b|A|66
Current chains
- Chain 6b
- tRNA
Nearby chains
- Chain 1b
- Large subunit ribosomal RNA; LSU rRNA
- Chain Iy
- 60S ribosomal protein L10
- Chain Zb
- 40S ribosomal protein S25-A
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