J4_6T83_016

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAG*UUC*GC*GCAGAUC

Length

16 nucleotides

Bulged bases

6T83|1|Aa|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T83|1|Aa|G|658
6T83|1|Aa|G|659
6T83|1|Aa|A|660
6T83|1|Aa|G|661
*
6T83|1|Aa|U|942
6T83|1|Aa|U|943
6T83|1|Aa|C|944
*
6T83|1|Aa|G|1375
6T83|1|Aa|C|1376
*
6T83|1|Aa|G|1431
6T83|1|Aa|C|1432
6T83|1|Aa|A|1433
6T83|1|Aa|G|1434
6T83|1|Aa|A|1435
6T83|1|Aa|U|1436
6T83|1|Aa|C|1437

Current chains

Chain Aa

25S rRNA

Nearby chains

Chain Ca

5.8S ribosomal RNA; 5.8S rRNA

Chain Fa

60S ribosomal protein L4-A

Chain L

60S ribosomal protein L28

Chain P

60S ribosomal protein L32