J4_6TB3_007

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TB3_007 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.0678

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6TB3|1|BQ|G|1674
6TB3|1|BQ|G|1675
*
6TB3|1|BQ|C|1693
6TB3|1|BQ|U|1694
*
6TB3|1|BQ|A|1752
6TB3|1|BQ|G|1753
*
6TB3|1|BQ|U|1772
6TB3|1|BQ|C|1773

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AI

60S ribosomal protein L38

Chain BL

60S ribosomal protein L22-A

Chain BN

60S ribosomal protein L34-A