J4_6TB3_010

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

6TB3|1|BQ|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TB3_010 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.0788

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TB3|1|BQ|C|2654
6TB3|1|BQ|U|2655
6TB3|1|BQ|A|2656
6TB3|1|BQ|A|2657
6TB3|1|BQ|G|2658
*
6TB3|1|BQ|U|2712
6TB3|1|BQ|U|2713
6TB3|1|BQ|G|2714
6TB3|1|BQ|A|2715
6TB3|1|BQ|U|2716
*
6TB3|1|BQ|A|2740
6TB3|1|BQ|C|2741
6TB3|1|BQ|C|2742
*
6TB3|1|BQ|G|2751
6TB3|1|BQ|U|2752
6TB3|1|BQ|G|2753

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L42-A

Chain AV

60S ribosomal protein L29

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A