J4_6TB3_012
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GU(1MG)(2MG)*C(M2G)C*GAU(7MG)(H2U)(5MC)C*GC
- Length
- 16 nucleotides
- Bulged bases
- 6TB3|1|n|U|8, 6TB3|1|n|H2U|47, 6TB3|1|n|5MC|48
- QA status
- Modified nucleotides: 1MG, 2MG, M2G, 7MG, H2U, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TB3_012 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1537
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6TB3|1|n|G|7
6TB3|1|n|U|8
6TB3|1|n|1MG|9
6TB3|1|n|2MG|10
*
6TB3|1|n|C|25
6TB3|1|n|M2G|26
6TB3|1|n|C|27
*
6TB3|1|n|G|43
6TB3|1|n|A|44
6TB3|1|n|U|45
6TB3|1|n|7MG|46
6TB3|1|n|H2U|47
6TB3|1|n|5MC|48
6TB3|1|n|C|49
*
6TB3|1|n|G|65
6TB3|1|n|C|66
Current chains
- Chain n
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 60S ribosomal protein L10
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain BW
- General negative regulator of transcription subunit 5
- Chain K
- 40S ribosomal protein S25-A
Coloring options: