J4_6TBV_003

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6TBV|1|16S1|C|576, 6TBV|1|16S1|A|815, 6TBV|1|16S1|C|817, 6TBV|1|16S1|A|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TBV_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.056

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6TBV|1|16S1|G|575
6TBV|1|16S1|C|576
6TBV|1|16S1|G|577
*
6TBV|1|16S1|C|764
6TBV|1|16S1|G|765
6TBV|1|16S1|A|766
6TBV|1|16S1|A|767
6TBV|1|16S1|A|768
6TBV|1|16S1|G|769
*
6TBV|1|16S1|C|810
6TBV|1|16S1|C|811
6TBV|1|16S1|G|812
6TBV|1|16S1|U|813
6TBV|1|16S1|A|814
6TBV|1|16S1|A|815
6TBV|1|16S1|A|816
6TBV|1|16S1|C|817
6TBV|1|16S1|G|818
6TBV|1|16S1|A|819
6TBV|1|16S1|U|820
6TBV|1|16S1|G|821
*
6TBV|1|16S1|C|879
6TBV|1|16S1|C|880

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA

Chain S081

30S ribosomal protein S8

Chain S121

30S ribosomal protein S12

Chain S151

30S ribosomal protein S15

Chain S171

30S ribosomal protein S17

Chain S211

30S ribosomal protein S21