J4_6TBV_006

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TBV_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1628

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6TBV|1|23S1|C|601
6TBV|1|23S1|A|602
6TBV|1|23S1|A|603
6TBV|1|23S1|G|604
*
6TBV|1|23S1|C|624
6TBV|1|23S1|G|625
6TBV|1|23S1|A|626
6TBV|1|23S1|A|627
6TBV|1|23S1|G|628
*
6TBV|1|23S1|C|635
6TBV|1|23S1|G|636
6TBV|1|23S1|A|637
6TBV|1|23S1|G|638
*
6TBV|1|23S1|C|650
6TBV|1|23S1|G|651
6TBV|1|23S1|U|652
6TBV|1|23S1|U|653
6TBV|1|23S1|A|654
6TBV|1|23S1|A|655
6TBV|1|23S1|G|656

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35