J4_6TH6_010

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|G|1900
6TH6|1|BA|A|1901
6TH6|1|BA|C|1902
6TH6|1|BA|U|1903
6TH6|1|BA|G|1904
*
6TH6|1|BA|C|1916
6TH6|1|BA|A|1917
6TH6|1|BA|C|1918
6TH6|1|BA|A|1919
6TH6|1|BA|G|1920
*
6TH6|1|BA|C|1955
6TH6|1|BA|G|1956
6TH6|1|BA|A|1957
6TH6|1|BA|C|1958
*
6TH6|1|BA|G|2088
6TH6|1|BA|U|2089
6TH6|1|BA|A|2090
6TH6|1|BA|A|2091
6TH6|1|BA|C|2092

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae

Chain Bk

LSU ribosomal protein L41E