J4_6TH6_011

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CUG*CGGGG*CCUCUUAAGGUAG*UGAAUG

Length

27 nucleotides

Bulged bases

6TH6|1|BA|U|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TH6|1|BA|C|1961
6TH6|1|BA|U|1962
6TH6|1|BA|G|1963
*
6TH6|1|BA|C|2018
6TH6|1|BA|G|2019
6TH6|1|BA|G|2020
6TH6|1|BA|G|2021
6TH6|1|BA|G|2022
*
6TH6|1|BA|C|2034
6TH6|1|BA|C|2035
6TH6|1|BA|U|2036
6TH6|1|BA|C|2037
6TH6|1|BA|U|2038
6TH6|1|BA|U|2039
6TH6|1|BA|A|2040
6TH6|1|BA|A|2041
6TH6|1|BA|G|2042
6TH6|1|BA|G|2043
6TH6|1|BA|U|2044
6TH6|1|BA|A|2045
6TH6|1|BA|G|2046
*
6TH6|1|BA|U|2080
6TH6|1|BA|G|2081
6TH6|1|BA|A|2082
6TH6|1|BA|A|2083
6TH6|1|BA|U|2084
6TH6|1|BA|G|2085

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bk

LSU ribosomal protein L41E