J4_6TNN_004
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAAAG*CC*GAUC*GG
- Length
- 14 nucleotides
- Bulged bases
- 6TNN|1|U|G|1309, 6TNN|1|U|A|1310, 6TNN|1|U|A|1312, 6TNN|1|U|U|1690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TNN_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.2036
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6TNN|1|U|C|1308
6TNN|1|U|G|1309
6TNN|1|U|A|1310
6TNN|1|U|A|1311
6TNN|1|U|A|1312
6TNN|1|U|G|1313
*
6TNN|1|U|C|1331
6TNN|1|U|C|1332
*
6TNN|1|U|G|1688
6TNN|1|U|A|1689
6TNN|1|U|U|1690
6TNN|1|U|C|1691
*
6TNN|1|U|G|2036
6TNN|1|U|G|2037
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
Coloring options: