J4_6TNN_009

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6TNN|1|U|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TNN_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.174

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6TNN|1|U|C|1860
6TNN|1|U|U|1861
6TNN|1|U|G|1862
*
6TNN|1|U|C|1932
6TNN|1|U|G|1933
*
6TNN|1|U|C|1951
6TNN|1|U|C|1952
6TNN|1|U|U|1953
6TNN|1|U|A|1954
6TNN|1|U|A|1955
6TNN|1|U|G|1956
6TNN|1|U|G|1957
6TNN|1|U|U|1958
6TNN|1|U|A|1959
6TNN|1|U|G|1960
*
6TNN|1|U|C|1994
6TNN|1|U|G|1995
6TNN|1|U|A|1996
6TNN|1|U|A|1997
6TNN|1|U|A|1998
6TNN|1|U|G|1999

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2