J4_6TPQ_003
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CAAG*CGCAG*CGAG*CGCAUGAG
- Length
- 21 nucleotides
- Bulged bases
- 6TPQ|1|U|G|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6TPQ_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.4406
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TPQ|1|U|C|643
6TPQ|1|U|A|644
6TPQ|1|U|A|645
6TPQ|1|U|G|646
*
6TPQ|1|U|C|668
6TPQ|1|U|G|669
6TPQ|1|U|C|670
6TPQ|1|U|A|671
6TPQ|1|U|G|672
*
6TPQ|1|U|C|679
6TPQ|1|U|G|680
6TPQ|1|U|A|681
6TPQ|1|U|G|682
*
6TPQ|1|U|C|694
6TPQ|1|U|G|695
6TPQ|1|U|C|696
6TPQ|1|U|A|697
6TPQ|1|U|U|698
6TPQ|1|U|G|699
6TPQ|1|U|A|700
6TPQ|1|U|G|701
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain e
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L35
Coloring options: