J4_6TPQ_009

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

6TPQ|1|U|A|1998

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6TPQ_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1568

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6TPQ|1|U|C|1860
6TPQ|1|U|U|1861
6TPQ|1|U|G|1862
*
6TPQ|1|U|C|1932
6TPQ|1|U|G|1933
*
6TPQ|1|U|C|1951
6TPQ|1|U|C|1952
6TPQ|1|U|U|1953
6TPQ|1|U|A|1954
6TPQ|1|U|A|1955
6TPQ|1|U|G|1956
6TPQ|1|U|G|1957
6TPQ|1|U|U|1958
6TPQ|1|U|A|1959
6TPQ|1|U|G|1960
*
6TPQ|1|U|C|1994
6TPQ|1|U|G|1995
6TPQ|1|U|A|1996
6TPQ|1|U|A|1997
6TPQ|1|U|A|1998
6TPQ|1|U|G|1999

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2