J4_6U8D_001

3D structure

PDB id

6U8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis C virus IRES junction IIIabc in complex with Fab HCV2

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

GAAC*GA*UUG*CC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69073.1

Basepair signature

cWW-cHS-cWW-cWS-cHW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6U8D|1|A|G|153
6U8D|1|A|A|154
6U8D|1|A|A|155
6U8D|1|A|C|156
*
6U8D|1|A|G|171
6U8D|1|A|A|172
*
6U8D|1|A|U|227
6U8D|1|A|U|228
6U8D|1|A|G|229
*
6U8D|1|A|C|238
6U8D|1|A|C|239

Current chains

Chain A

JIIIabc RNA (68-MER)

Nearby chains

Chain H

Heavy chain of Fab HCV2