J4_6UCQ_035
3D structure
- PDB id
- 6UCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome recycling complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6UCQ|1|2y|4SU|8, 6UCQ|1|2y|U|47, 6UCQ|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6UCQ_035 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.3423
- The information below is about J4_6UGG_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6UCQ|1|2y|A|7
6UCQ|1|2y|4SU|8
6UCQ|1|2y|A|9
6UCQ|1|2y|G|10
*
6UCQ|1|2y|C|25
6UCQ|1|2y|A|26
6UCQ|1|2y|G|27
*
6UCQ|1|2y|C|43
6UCQ|1|2y|G|44
6UCQ|1|2y|U|45
6UCQ|1|2y|7MG|46
6UCQ|1|2y|U|47
6UCQ|1|2y|C|48
6UCQ|1|2y|C|49
*
6UCQ|1|2y|G|65
6UCQ|1|2y|U|66
Current chains
- Chain 2y
- P-site and E-site tRNAs
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
- Chain 2x
- Transfer RNA; tRNA
Coloring options: