J4_6UO1_003

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6UO1|1|1A|G|1271, 6UO1|1|1A|A|1272, 6UO1|1|1A|U|1273, 6UO1|1|1A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UO1_003 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0669

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6UO1|1|1A|C|1270
6UO1|1|1A|G|1271
6UO1|1|1A|A|1272
6UO1|1|1A|U|1273
6UO1|1|1A|A|1274
6UO1|1|1A|A|1275
6UO1|1|1A|A|1276
*
6UO1|1|1A|U|1294
6UO1|1|1A|C|1295
*
6UO1|1|1A|G|1645
6UO1|1|1A|C|1646
6UO1|1|1A|G|1647
6UO1|1|1A|C|1648
*
6UO1|1|1A|G|2009
6UO1|1|1A|G|2010

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22