J4_6UO1_023

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UO1_023 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0645

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6UO1|1|2A|G|1772
6UO1|1|2A|A|1773
6UO1|1|2A|C|1774
6UO1|1|2A|U|1775
6UO1|1|2A|G|1776
*
6UO1|1|2A|C|1788
6UO1|1|2A|A|1789
6UO1|1|2A|C|1790
6UO1|1|2A|A|1791
6UO1|1|2A|G|1792
*
6UO1|1|2A|C|1827
6UO1|1|2A|G|1828
6UO1|1|2A|A|1829
6UO1|1|2A|C|1830
*
6UO1|1|2A|G|1975
6UO1|1|2A|U|1976
6UO1|1|2A|A|1977
6UO1|1|2A|A|1978
6UO1|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA