J4_6UO1_024

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6UO1|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UO1_024 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0805

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6UO1|1|2A|U|1833
6UO1|1|2A|U|1834
6UO1|1|2A|G|1835
*
6UO1|1|2A|C|1905
6UO1|1|2A|G|1906
*
6UO1|1|2A|C|1924
6UO1|1|2A|C|1925
6UO1|1|2A|U|1926
6UO1|1|2A|A|1927
6UO1|1|2A|A|1928
6UO1|1|2A|G|1929
6UO1|1|2A|G|1930
6UO1|1|2A|U|1931
6UO1|1|2A|A|1932
6UO1|1|2A|G|1933
*
6UO1|1|2A|C|1967
6UO1|1|2A|G|1968
6UO1|1|2A|A|1969
6UO1|1|2A|A|1970
6UO1|1|2A|A|1971
6UO1|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA