J4_6UO1_032
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCCU*AGU
- Length
- 18 nucleotides
- Bulged bases
- 6UO1|1|2y|4SU|8, 6UO1|1|2y|U|47, 6UO1|1|2y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6UO1|1|2y|A|7
6UO1|1|2y|4SU|8
6UO1|1|2y|A|9
6UO1|1|2y|G|10
*
6UO1|1|2y|C|25
6UO1|1|2y|A|26
6UO1|1|2y|G|27
*
6UO1|1|2y|C|43
6UO1|1|2y|G|44
6UO1|1|2y|U|45
6UO1|1|2y|7MG|46
6UO1|1|2y|U|47
6UO1|1|2y|C|48
6UO1|1|2y|C|49
6UO1|1|2y|U|50
*
6UO1|1|2y|A|64
6UO1|1|2y|G|65
6UO1|1|2y|U|66
Current chains
- Chain 2y
- A-site and E-site tRNAs
Nearby chains
- Chain 26
- 50S ribosomal protein L33
- Chain 2a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2g
- 30S ribosomal protein S7
- Chain 2k
- 30S ribosomal protein S11
Coloring options: