J4_6UZ7_009

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6UZ7_009 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.1687

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

6UZ7|1|5|G|1643
6UZ7|1|5|G|1644
*
6UZ7|1|5|C|1662
6UZ7|1|5|U|1663
*
6UZ7|1|5|A|1721
6UZ7|1|5|G|1722
*
6UZ7|1|5|U|1741
6UZ7|1|5|C|1742

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AU

KLLA0D05181p

Chain Bg

KLLA0C08371p

Chain Bk

KLLA0C18216p