J4_6UZ7_010
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6UZ7_010 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0963
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6UZ7|1|5|G|2099
6UZ7|1|5|A|2100
6UZ7|1|5|C|2101
6UZ7|1|5|U|2102
6UZ7|1|5|G|2103
*
6UZ7|1|5|C|2115
6UZ7|1|5|A|2116
6UZ7|1|5|U|2117
6UZ7|1|5|A|2118
6UZ7|1|5|G|2119
*
6UZ7|1|5|U|2155
6UZ7|1|5|G|2156
6UZ7|1|5|A|2157
6UZ7|1|5|U|2158
6UZ7|1|5|U|2159
*
6UZ7|1|5|A|2286
6UZ7|1|5|U|2287
6UZ7|1|5|U|2288
6UZ7|1|5|A|2289
6UZ7|1|5|A|2290
6UZ7|1|5|C|2291
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AA
- KLLA0D16027p
- Chain Bn
- 60S ribosomal protein L41
- Chain Bp
- KLLA0E05941p
Coloring options: