J4_6V39_002
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GGAAC*GAAC*GAG*CGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V39_002 not in the Motif Atlas
- Homologous match to J4_5J7L_019
- Geometric discrepancy: 0.1123
- The information below is about J4_5J7L_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|AN1|G|299
6V39|1|AN1|G|300
6V39|1|AN1|A|301
6V39|1|AN1|A|302
6V39|1|AN1|C|303
*
6V39|1|AN1|G|318
6V39|1|AN1|A|319
6V39|1|AN1|A|320
6V39|1|AN1|C|321
*
6V39|1|AN1|G|325
6V39|1|AN1|A|326
6V39|1|AN1|G|327
*
6V39|1|AN1|C|339
6V39|1|AN1|G|340
6V39|1|AN1|U|341
6V39|1|AN1|A|342
6V39|1|AN1|C|343
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L24
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