J4_6V39_003

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

6V39|1|AN1|U|651, 6V39|1|AN1|U|652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6V39_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5316

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6V39|1|AN1|C|599
6V39|1|AN1|G|600
6V39|1|AN1|A|601
6V39|1|AN1|G|602
*
6V39|1|AN1|C|622
6V39|1|AN1|G|623
6V39|1|AN1|U|624
6V39|1|AN1|A|625
6V39|1|AN1|G|626
*
6V39|1|AN1|C|633
6V39|1|AN1|G|634
6V39|1|AN1|A|635
6V39|1|AN1|G|636
*
6V39|1|AN1|C|648
6V39|1|AN1|G|649
6V39|1|AN1|U|650
6V39|1|AN1|U|651
6V39|1|AN1|U|652
6V39|1|AN1|A|653
6V39|1|AN1|G|654

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15