J4_6V39_008

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6V39|1|AN1|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6V39_008 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1912

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6V39|1|AN1|C|1829
6V39|1|AN1|U|1830
6V39|1|AN1|G|1831
*
6V39|1|AN1|C|1901
6V39|1|AN1|G|1902
*
6V39|1|AN1|C|1920
6V39|1|AN1|C|1921
6V39|1|AN1|U|1922
6V39|1|AN1|A|1923
6V39|1|AN1|A|1924
6V39|1|AN1|G|1925
6V39|1|AN1|G|1926
6V39|1|AN1|U|1927
6V39|1|AN1|A|1928
6V39|1|AN1|G|1929
*
6V39|1|AN1|C|1963
6V39|1|AN1|G|1964
6V39|1|AN1|A|1965
6V39|1|AN1|A|1966
6V39|1|AN1|U|1967
6V39|1|AN1|G|1968

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain sN1

Small subunit ribosomal RNA; SSU rRNA

Chain v

Transfer RNA; tRNA