J4_6V3A_013
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6V3A|1|sN1|C|573, 6V3A|1|sN1|A|812
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3A_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0832
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6V3A|1|sN1|G|572
6V3A|1|sN1|C|573
6V3A|1|sN1|G|574
*
6V3A|1|sN1|C|761
6V3A|1|sN1|G|762
6V3A|1|sN1|A|763
6V3A|1|sN1|A|764
6V3A|1|sN1|A|765
6V3A|1|sN1|G|766
*
6V3A|1|sN1|C|807
6V3A|1|sN1|C|808
6V3A|1|sN1|G|809
6V3A|1|sN1|U|810
6V3A|1|sN1|A|811
6V3A|1|sN1|A|812
6V3A|1|sN1|A|813
6V3A|1|sN1|C|814
6V3A|1|sN1|G|815
6V3A|1|sN1|A|816
6V3A|1|sN1|U|817
6V3A|1|sN1|G|818
*
6V3A|1|sN1|C|876
6V3A|1|sN1|C|877
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S21
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