J4_6V3A_014
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- G(4SU)AG*CAC*GGGGUCA*UC
- Length
- 16 nucleotides
- Bulged bases
- 6V3A|1|v|4SU|8, 6V3A|1|v|U|48, 6V3A|1|v|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3A_014 not in the Motif Atlas
- Homologous match to J4_7MRL_001
- Geometric discrepancy: 0.3321
- The information below is about J4_7MRL_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6V3A|1|v|G|7
6V3A|1|v|4SU|8
6V3A|1|v|A|9
6V3A|1|v|G|10
*
6V3A|1|v|C|26
6V3A|1|v|A|27
6V3A|1|v|C|28
*
6V3A|1|v|G|44
6V3A|1|v|G|45
6V3A|1|v|G|46
6V3A|1|v|G|47
6V3A|1|v|U|48
6V3A|1|v|C|49
6V3A|1|v|A|50
*
6V3A|1|v|U|66
6V3A|1|v|C|67
Current chains
- Chain v
- tRNA-met
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain m
- 30S ribosomal protein S13
- Chain sN1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: