J4_6V3B_003
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- CGAG*CGUAG*CGAG*CGUUUAG
- Length
- 20 nucleotides
- Bulged bases
- 6V3B|1|AN1|U|651, 6V3B|1|AN1|U|652
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6V3B_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5409
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6V3B|1|AN1|C|599
6V3B|1|AN1|G|600
6V3B|1|AN1|A|601
6V3B|1|AN1|G|602
*
6V3B|1|AN1|C|622
6V3B|1|AN1|G|623
6V3B|1|AN1|U|624
6V3B|1|AN1|A|625
6V3B|1|AN1|G|626
*
6V3B|1|AN1|C|633
6V3B|1|AN1|G|634
6V3B|1|AN1|A|635
6V3B|1|AN1|G|636
*
6V3B|1|AN1|C|648
6V3B|1|AN1|G|649
6V3B|1|AN1|U|650
6V3B|1|AN1|U|651
6V3B|1|AN1|U|652
6V3B|1|AN1|A|653
6V3B|1|AN1|G|654
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L15
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