J4_6VLZ_004

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6VLZ|1|A|U|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VLZ_004 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.303

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6VLZ|1|A|C|2544
6VLZ|1|A|U|2545
6VLZ|1|A|G|2546
*
6VLZ|1|A|C|2569
6VLZ|1|A|C|2570
*
6VLZ|1|A|G|2587
6VLZ|1|A|C|2588
6VLZ|1|A|A|2589
6VLZ|1|A|A|2590
6VLZ|1|A|A|2591
6VLZ|1|A|G|2592
6VLZ|1|A|G|2593
6VLZ|1|A|U|2594
6VLZ|1|A|A|2595
6VLZ|1|A|G|2596
*
6VLZ|1|A|U|2630
6VLZ|1|A|G|2631
6VLZ|1|A|A|2632
6VLZ|1|A|A|2633
6VLZ|1|A|U|2634
6VLZ|1|A|G|2635

Current chains

Chain A

16s rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial