J4_6VLZ_009
3D structure
- PDB id
- 6VLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- GAG*CAAUAG*CCCUAAACCUCA*UC
- Length
- 23 nucleotides
- Bulged bases
- 6VLZ|1|AA|A|942, 6VLZ|1|AA|C|1099, 6VLZ|1|AA|A|1103, 6VLZ|1|AA|C|1106, 6VLZ|1|AA|C|1108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VLZ_009 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.3102
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6VLZ|1|AA|G|941
6VLZ|1|AA|A|942
6VLZ|1|AA|G|943
*
6VLZ|1|AA|C|1052
6VLZ|1|AA|A|1053
6VLZ|1|AA|A|1054
6VLZ|1|AA|U|1055
6VLZ|1|AA|A|1056
6VLZ|1|AA|G|1057
*
6VLZ|1|AA|C|1098
6VLZ|1|AA|C|1099
6VLZ|1|AA|C|1100
6VLZ|1|AA|U|1101
6VLZ|1|AA|A|1102
6VLZ|1|AA|A|1103
6VLZ|1|AA|A|1104
6VLZ|1|AA|C|1105
6VLZ|1|AA|C|1106
6VLZ|1|AA|U|1107
6VLZ|1|AA|C|1108
6VLZ|1|AA|A|1109
*
6VLZ|1|AA|U|1132
6VLZ|1|AA|C|1133
Current chains
- Chain AA
- 12s rRNA
Nearby chains
- Chain A2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain A3
- Aurora kinase A-interacting protein
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
- Chain AQ
- 28S ribosomal protein S21, mitochondrial
- Chain AT
- 28S ribosomal protein S25, mitochondrial
Coloring options: